kaede0e

Hi Shujun, Oh I see thanks for the clarification, I'll try adding it. Sincerely, Kaede

Hi Shujun, Hmm it seems to indicate that the RepeatModeler didn't run properly when I've added --recoverDir RM_* extension to the line 493. I was in the process of round-6,...

Hi Shujun, The -recoverDir extension does work if I run RepeatModeler separately. The command line looks like this: RepeatModeler -database ${genus}_whole_genome -recoverDir RM_271804.WedFeb21527082022 -pa 1 I was going to try...

No, but we decided to move forward with doing EDTA chromosome by chromosome to fit our computational resource.

Hi Shujun, I don't fully understand why performing EDTA chromosome by chromosome will create false positives. Is it the raw TE library filtering stage that could miss-identify TEs if I've...