Jeremy Volkening
Jeremy Volkening
Currently, when running prodigal, prokka automatically sets anonymous (formerly metagenome) mode when the total input sequences are shorter than 100,000 bases. If a training file is specified with the `--prodigaltf`...
Hello, I've been using kallisto/sleuth for DE analysis of a virus/host dataset. It has been working well for analysing the full transcript set, but now I would like to normalize...
I make frequent use of the defined-or assignment operator (e.g. `$a //= $b`). Devel::Cover seems do look for tests for three situations: `$a` is defined, `$a` is undefined but `$b`...
It appears that eMusic (now under eStories for audiobooks) is no longer using the same format for downloads. The website now serves a zip file from the user's web library...
The user manual or its source code should be included in the repository (apparently I have to go the REFRESH web page to find it currently).
Compiling example 3.4.3 from the manual succeeds (after fixing argv_ indices on lines 12 and 13) and the resulting binary compresses a test file. The binary produced by compiling example...
Hello all. I was getting the rather vague error ``` Problem opening mzml file spectra/Ctrl1_5min_total.mzML; One or more errors occurred. ``` When I re-converted my files using different settings, I...
I'm evaluating percolator 3.01 to perform FDR calculation as part of a pipeline. It's unclear to me how it handles evaluation of concatenated target/decoy search results. The help text for...
This isn't really a bug *or* a feature request, and is related to #219. It took me a while to figure out this behavior (default table 1 allowed start codons...
Removed perl-compress-bgzf (migrated to conda-forge) ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request (PR). ### General instructions * If this PR adds or updates a...