Jeremy Volkening

Results 10 comments of Jeremy Volkening

Two years later, but since this issue is still 'open'... I would like to have `tbl2asn` as a standalone tool for use within various annotation and submission workflows. In checking...

I also receive those messages when using `--max-db-size`. KrakenUniq removes kmers from the database during shrinking, but then warns that they are missing during the `set_lca` stage. They are not...

This is an old issue, but I am still getting the `Required parameter missing: API version` exception when trying to use Glacier. I can see in the codebase where the...

That was quick! I'm away from this at the moment but will test your fix hopefully later today.

That commit fixed the above error, but other header(s) are now missing. Currently: `Required parameter missing: partSize` I suspect line 276 in `builder-lib/Paws/API/Builder.pm`: ``` 269 sub capitalize_shape { 270 my...

Sorry - I thought I had posted an update but apparently that was only in my head. The headers seem to be working now. However, the return objects are not....

> ./scripts/krakenuniq-build --db DBDIR-temp --kmer-len 31 --threads 10 --taxids-for-genomes --taxids-for-sequences --jellyfish-bin 1 If you specify `--jellyfish-bin`, it should be the path to the `jellyfish` v1 executable, not "1". I'm not...

Hello Sheerli, This is still due to having an empty value for `--jellyfish-bin` in your command. You need to have Jellyfish version 1 installed to use the KrakenUniq build commands....

> Can't merge hashes with different reprobing stratgies This is a jellyfish error -- I've not encountered it before. Are you sure you're not running out of disk space for...