João Cavalcante

Hi @andschar how's the work for this coming along? Being a Wikidata editor, I think I could help out a bit with this one, if it's not solved yet. I...

Agreed, this issue needs revisiting. I'm using fastp to merge paired-end reads and it's working great but I'm having to parse every output to fix the incorrect quality captions. Would...

Hi, so I ended up removing the genome that had 'BLONNJ_19495' and tried running it again. Unfortunately I overwrote the old results, but got the exact same error, this time...

> Just in case, if you have no means of sharing your pangenome.h5 file, if you share with us your email address someone from the ppanggolin dev team can provide...

Had this same issue after some software updates and can confirm that it worked after deleting the `basilisk` cache directory and restarting the R session, i.e. `rm -rf ~/.cache/R/basilisk/`.

I see! Thank you so much for your patience. I managed to fix the issue on my side as well after changing the TMPDIR singularity was using.

> Quick follow up: > > I tested out fresh PhiSpy installations across two separate machines running the same OS (Ubuntu 22.04 LTS), running same commands on conda-installed PhiSpy environments....

Hi! Such a feature is not yet available. Development in this project is a bit stagnated because I have many other priorities at the moment so it might be a...

Given [the feature just got merged into the dev branch](https://github.com/nf-core/tools/pull/3083#issuecomment-2737053434) I'm marking this PR as ready to review!

> Is this a duplicate of #2928 ? While similar, I don't think they mention the exact same thing. The issue there seems to be related to the name of...