Simon Murray

Pulling latest version of MultiQC image on GitPod fails

10

### Description of bug When I am inside a GitPod container which has Docker preinstalled and I attempt to pull the MultiQC Docker Image: `quay.io/biocontainers/multiqc:1.19--pyhdfd78af_0` or `quay.io/biocontainers/multiqc:1.18--pyhdfd78af_0` the image does...

Singularity Image is broken

4

Hi @wheaton5, The singularity image in the latest release that you host on google drive is broken. The path looks like: ``` /miniconda3/bin:/miniconda3/condabin:/miniconda3/bin:/opt/minimap2-2.26_x64-linux:/opt/bedtools-2:/opt/freebayes/build:/opt/hisat2-2.2.1:/opt/bedtools2/bin:/opt/souporcell:/opt/souporcell/troublet/target/release:/usr/local/condabin:/opt/minimap2-2.26_x64-linux:/root/.cargo/bin:/opt:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ``` however looking inside the image, bedtools...

Leidenalg not found error

1

When running the single cell RNA seq course last week. We found that the command: `srat

Cellphone DB (and other database versions)

5

Hi, Sorry if this information is available somewhere but I cannot find it. I would like to know what version of cellphoneDB (and other databsases) you have inside the liana-py...