Jean-Sebastien Gounot
Jean-Sebastien Gounot
Hi, I'm trying to build a custom krakenuniq database based on your manual, but without success so far: ``` Building taxonomy index from taxonomy//nodes.dmp and taxonomy//names.dmpCould not find parent with...
#### Potential related issues All issues related to long runtime: #21, #24, #27 #### Description After spending a day figuring out why the software takes hours to finish on some...
Some clusters (like mine) have harsh limitations on file numbers / size. Sadly, some pipelines might also include steps or software generating thousands of files. One solution to circumvent this...
Hi. I explore the possibility to use sourmash to identify isolate origin based on nanopore data. Each sample is supposed to have only one species. I know that ONT reads...
Hi, First, thanks for this soft. I've been running a lot of badread runs for a project and while waiting for the soft to finish, I found it fun to...
Hi everyone, I'm fairly new in the machine learning field, so my apologies if the question seems very simple. I'm trying to do some classification on several datasets with some...
Hi, I run Gretel on different datasets. I've got this error message : > [FAIL] Unable to recover pairwise evidence concerning SNP #15 at position 1077 Gretel needs every SNP...
Hi, first thanks for the hard work. I would like to suggest a couple of potential interesting features (at least for me) : * Add tags to links and allow...
Hi, I don't know if it's already existent, but I would like to calculate the difference between two intervals, like that : i1 = interval([3,4], [7,9]) i2 = interval([0,10]) foo(i1,...
Hi, would it be possible to allow parsnp to handle gzipped compressed files? This would save some processing and disk space when running parsnp on a lot of genomes that...