James Richard Otieno

icon indicating a website link https://www.jamesrichardotieno.com

icon location Kilifi, Kenya icon location Public Health | Phylodynamics | Bayesian inference | Virus Evolution | Disease ecology | Workforce Development

Results 2 issues of James Richard Otieno

nextclade run with optional dataset tag input

5 comment

The `nextclade run --dataset-name xx` is great and uses by default the latest dataset tag. However, as mentioned in the documentation, "If a new version of the dataset is released...

t:feat
good first issue
help wanted

Add MERS-CoV Nextclade community dataset entry

1 comment

## Description of proposed changes To add a MERS-CoV nextclade dataset for rapid clade assignment. At present, only able to assign clades (A, B and C) but not lineages (will...