James Richard Otieno
James Richard Otieno
Just coming back to this issue: 1. The samples we have are older **H3N2**s (**2009-2015**), and are just for training purposes. We wanted a good study, with raw reads available...
Do you know if your rselenium code can extract the sequencing technology field?
Many thanks @ivan-aksamentov for the swift response! We have been using the 2-stage flow. However, I wanted to also have the option of running `nextclade sort` that would predict the...
While here, is there a way to output the dataset tag used from a nextclade run command with an input dataset name?
For anyone following, my tentative solution is `nextclade dataset list --name $dataset_name --json` for the predicted dataset name, then parsing the output for the default version under the "version" block....