Joshua C. Randall

This issue is affecting me as well. It seems that Boost installed in a separate prefix (alongside a system installed Boost) that is built with the default options as of...

For `bgzip`, we could make the ".bgz" extension an optional (non-default) filename. For the rest of `htslib`/`samtools`/`bcftools`, we should make sure that ".bgz" files are recognized as bgzip for input...

@thomcc I suppose having now set the sqlite API to explicitly have default visibility, we now do also have the option of setting `-fvisibility=hidden` (which is already clang's default on...

The reason we need this is so that we can implement vtables that use shadow tables (underlying sqlite tables that store data for the vtable), in which we initialise a...

I like the concept of freezing and thawing the statement, and I sympathize with wanting to find an API for this that can be made safe. However, the slowness of...

The `modern_sqlite` feature is probably enough when linking sqlite at build time, but when we build a run-time loadable extension (pending #631) it seems more important to ensure that we've...

Any further direction in what should be updated to get this into a mergeable state?

Thanks @gwenn - that has been changed.

Just a note to confirm that this PR is a "small" contribution and for that reason I have permission from my employer to contribute it under the terms of the...

The `api_routines_stub` feature existed to indicate that the underlying libsqlite3 version was one that included the typedef stub in `sqlite.h`: ``` /* ** CAPI3REF: Loadable Extension Thunk ** ** A...