jplfaria

Adding "pigment" and "carbohydrate" to biomass composition because of cyano template

Handling KEGG Prefixes with Identical URI Resolution

2

### KEGG Ontology Prefix Handling We are currently using two KEGG prefixes: - **kegg.reaction** ([KEGG Reaction](https://bioregistry.io/registry/kegg.reaction)) - **kegg.pathway** ([KEGG Pathway](https://bioregistry.io/registry/kegg.pathway)) Both of these prefixes resolve to the same base URL:...

New source: SILVA taxonomy

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## Summary This pull request implements the SILVA taxonomy as an ontology converter. The module converts SILVA small subunit (SSU) taxonomy data into OBO (and OWL) format and is organized...

Inconsistent IRIs Between eccode and rhea Sources

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**Description:** I have observed that the eccode and the rhea sources use different IRI schemes for referencing Uniprot resources: - **eccode example:** Uses a Bioregistry URL, for example: `https://bioregistry.io/uniprot:F4I907` -...

It's great to see that in the new release here: https://biopragmatics.github.io/obo-db-ingest/ we are at r226, which means the bioversions module worked as expected for the new release. My current challenge...