Julianus Pfeuffer
Julianus Pfeuffer
1- it's the only one that correctly represents the DAG
Ah, if pmultiqc is the only step in the summary pipeline sub workflow you can also just use pmultiqc directly in the parent workflow if you want. But you don't...
A Xmas bug? 😱 Merry Christmas @ypriverol 🎄
Hmm yes, a bit tricky but I would say we should handle it in the PLFQ tool. I am not 100% sure if it is possible regarding map alignment. Some...
I think @timosachsenberg means to filter the files in nextflow and just not pass them into the next step when they fail. I think by now we handle subsets of...
this should be supported already in LFQ and TMT mode
Do you have the idxmls of the different search engines for one file? I assume it's a consensusid, otherwise it's weird ;)
That's mostly a Percolator error though. Is is Sage-only or multiple engines with ConsensusID? Did you try the fix suggested in the error? As a last resort I would plot...
I know that @timosachsenberg has this error a lot in cross linking experiments
Or sage only to see if sage is the reason or the combination