Julianus Pfeuffer comments

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                                            Julianus Pfeuffer

Caching of contrib in OpenMS CI full action

On Windows, ConanCenter has everything that we need. Maybe we can use conan just for installing without any crazy integration into our CMake. The advantage is that it has binary...

Caching of contrib in OpenMS CI full action

By the way, GLPK is optional and for binary distributions we should probably remove it due to GPL licensing.

Caching of contrib in OpenMS CI full action

Ah good old MRMAssay_test.. the end boss for continuous testing

initial support for export of peak annotations

Can you check the KNIME import?

initial support for export of peak annotations

https://github.com/genericworkflownodes/de.openms.knime/blob/develop/de.openms.knime.textexporter_reader/src/de/openms/knime/TextExporterParser.java

Very slow builds on CI machine

We have exactly the same problem. I am not sure if it's really stuck at the "Reloading output folder" step or just not reporting what it is doing anymore. I...

Very slow builds on CI machine

For reference, this is one of the runs with debug: https://github.com/bigbio/quantms-utils/actions/runs/11929175706/job/33247451809

Very slow builds on CI machine

Even `conda build` is faster than boa 😂

removes need for PSMFeatureExtractor by always adding percolator features

Have you tried the overwriteTOPPTests tool?

enable parallel consumer in mzMLHandler

Makes sense. Did consuming allow changing the number of spectra? No, right? Then the only problem might be nestedness of openmp. Not sure what to look out for there though.