Julianus Pfeuffer
Julianus Pfeuffer
Looks a bit complicated/flaky and wasteful on GitHub resources (every matrix branch will now take as much time as the longest). @timosachsenberg Are you sure that there is a limit...
One thing missing: You must still talk to IT about organizing the SSH/SCP/RSYNC (or others) to the archive. Not sure what would be the most secure way. Note that anyone...
Yes, however, it is not easy to allow the creation of new files without allowing deletion.
Note that this is almost finished on the mentioned branch. Needs testing and adjusting
Maybe merge into develop with the PR and push triggers commented out. Then test with workflow_dispatch
I think this belongs to the KNIME testing sprint tasks. I fear, if it was not fixed upstream, it will still exist.
I just added some more notes. I don't think my settings have a lot of impact if elution_model is still on. FFID will fit a combined model with all traces...
If my settings indeed had an effect, it must mean that e.g. the elution_model_score is missing now and the combined SWATH LDA prescore is affected (it includes the elution_model_score). Apparently...
It is also a bit unfortunate that we have 3 different fitting steps in the pipeline despite being the computationally most expensive step 🥲 I disabled 2 of 3 for...
Yes I think filtering some of the low intensity features is probably more helpful but what's a bit unfortunate is that the ElutionModelFitter does not support background substraction (which I...