Julianus Pfeuffer
Julianus Pfeuffer
Maybe it is a sorting or tie-resolution problem? Did it maybe choose differently between two very similar spectra? How did you know which one is "wrong"?
Do you maybe find another entry for which the Unix version matches? But I agree it looks weird that it takes the mz value.
What is the status? We should update multiple thirdparties currently.
Yes, unfortunately we did not yet implement support for non-default Comet enzymes: http://comet-ms.sourceforge.net/parameters/parameters_202001/search_enzyme_number.php One would need to create an own comet.params file to do that and allow its specification in...
Yes, most of them are expected when used in combination with MSGF+ which does not support post-cutting rules: https://github.com/nf-core/proteomicslfq/blob/43c77e50c955d7e62899e7d31e0d6f6a87ac2316/main.nf#L525 I did not expect the error for unspecific cleavage. Can you...
Ah yes, thank you! Confirms my idea that there was also a case-sensitivity "bug". It might work already with "unspecific cleavage". But my linked PR should fix this as well.
This precedes CI and needs to be updated to run the tests. And looking at our comments, it sounds like CI might fail.
@timosachsenberg Now you can see the failures. Once they are fixed, we can merge.
PortingGuide https://doc.qt.io/qt-6/portingguide.html There is even a porting tool https://doc.qt.io/qt-6/porting-to-qt6-using-clazy.html
@poshul FYI