Julianus Pfeuffer
Julianus Pfeuffer
Same problem for us. See attempts in https://github.com/bigbio/quantms/runs/6202148480?check_suite_focus=true The attempts actually show both errors mentioned here. Also working with nextflow.
First has been implemented in #166 Second had to be and has been implement in OpenMS directly. I think Fourth is also solved.
This is however probably out of scope for us since we use C++ only.
Hi, can you add test files, add the test to e.g. test_code_generator and open a PR?
Does it work with more basic instantiation? E.g. `# ScoreTypeRef := IteratorWrapper[A]`
ahh hmm that might also be the cause, yes. Can you check if it works locally in the same pxd file?
Is a cimport for ScoreTypeRef generated in the b.pxd file?
There is a similar test for this in autowrap already. There we just explicitly specify the instantiation again. https://github.com/OpenMS/autowrap/blob/04192b9ab6ed74d9d72c032587e222dbbfdb6a38/tests/test_files/templated.pxd#L45
Probably only "cppclass"es can be put as template parameter. And the instantiation is already a cython "class".
yes I can confirm. ``` self = typemap = {'T': , 'T2': , 'Templated': , 'Templated_other': , ...} indent = 0 def _transform(self, typemap, indent): aliased_t = typemap.get(self.base_type) if aliased_t...