Josiah Seaman

Thanks for chiming in, Bryan. Cx_freeze was working on Windows until very recently. So I was planning on spending Wednesday trying to get it working again. It's a good solution...

As of Python 3.5 it almost looks like this is supported in core python. The documentation makes it sound so easy. https://docs.python.org/3.6/using/windows.html#embedded-distribution

It looks like I have the first successful run of PyInstaller since the pip refactor for FluentDNA broke cx_freeze. I have a windows binary and folder that seem to be...

Color calculations could also be done in "Lab" space to create the correct perceptual average and eliminate much of the Moire effect. https://www.codeproject.com/Articles/19045/Manipulating-colors-in-NET-Part https://en.wikipedia.org/wiki/Lab_color_space#Approximate_formulas_for_Ka_and_Kb

With permission, I would like to implement this feature as part of my PhD Thesis. I need the gene count history information output by Cafe plus the WGD handling of...

I was able to get Cafe to run by rounding everything to the nearest integers and then manually making it ultrametric. The tree is a lot less accurate now, but...

I'm considering a pull request for this issue then. It seems like a `max(1, round(branch_length))` would do it. What's the downside to using a slightly non-ultrametric integer tree rather than...