Josiah Seaman

Results 17 comments of Josiah Seaman

Hi James, I'm happy to see that there's activity on this repo. I'm a developer on a different visualization project. I just wanted to let you know I get notifications,...

![image](https://user-images.githubusercontent.com/2256148/37903956-d1289a3c-30f1-11e8-9540-20a1f01c83d0.png) First working run after converting Yan Wong's code to use FluentDNA architecture. Next step: condense.

![image](https://user-images.githubusercontent.com/2256148/37906861-4e8d19d6-30fb-11e8-89b8-327c17b3a7d9.png) I figured out x and y scale and how to collapse it.

### Pending Enhancements - [ ] Handling more than one Contig in a single image - [ ] Poster Layout logic for chromosome order and labels - [ ] Separate...

Definitely, I have put a fair amount of thought into this as well. I have a sequence categorization prototype that could be used to expand an annotation. **Deep Variant** https://www.biorxiv.org/content/early/2018/03/20/092890...

Overlaps can get messy. Just skip it. Maybe if you want, you can fit two "lanes" but definitely don't stack indefinitely like we have done previously: ![image](https://cloud.githubusercontent.com/assets/2256148/17148638/31d09238-5325-11e6-89ab-95f2bf2031dc.png)

I've decided to stick to straight images for Annotations. However, I'm going to continue using this issue for continuity sake.

AnnotatedGenome added in 752eaae9ecd5a273b3890ffa7444461db59b39c4 and b937bed9d9d4339fa8371ba55d2cc1d0f3a60aa4. Final feature needed is to make the annotation columns much skinnier, since they're less informative. We want to define the "width reduction" in such...

fc34df28fbd018bc2ed2844abc27806d3634cb9c 3030d9f581d677f507eed1e260e10f8c612f4186 Work in Progress: Text coordinates are still off.

Docker may be disqualified if it can't support a GUI. https://forums.docker.com/t/how-to-run-a-gui-application-on-docker/48437/6 "We can run any application in Docker as long as it can be installed and executed unattended, although we...