Jose E. Verdezoto Mosquera

icon indicating an email [email protected]

icon company University of Virginia icon location Charlottesville, VA icon location Current graduate student at the Miller lab at the UVA Center for Public Health Genomics. Former data analyst at the @databio research group.

Results 4 issues of Jose E. Verdezoto Mosquera

iGD integration

Updated/Added scripts: - Added new script `runLOLA_iGD.R` updating the overlap calculations with IGDr. - Some minor changes to the `loadPEPdb` function to load the location of the iGD database as...

PEP loading function for LOLA

4 comment

runLOLA results table for PEP databases

As of now, the **runLOLA()** results table displays columns defined in the index.txt file (e.g tissue, antibody). If the PEP sample annotation sheet doesn't contain those fields, the overlaps and...

Saving raw h5ad files upon running snap.pp.import_data

3 comment

Hey Kai, Thanks so much for developing snapATAC2. I've been using it for a bit and really like it! I do have one question regarding working with files in backed...