Michael Joseph
Michael Joseph
Patch2Self was brought to my attention by a colleague and was also announced on Neurostars yesterday: https://neurostars.org/t/patch2self-self-supervised-denoiser-for-diffusion-mri-data-let-your-old-data-live-a-new-life/17671 The paper explaining more can also be found here: https://arxiv.org/pdf/2011.01355.pdf They include comparisons...
### Description N4BiasFieldCorrections fails on a subset of participants in one dataset that I've been testing. The subjects were all scanned on a Siemens Prisma. ### What I Did ```...
Closes #64 and #128. Replaces PR #73. - [ ] report diffusion sampling scheme: shelled, radial or Cartesian - [x] report shell distribution - [x] expose bmag parameter to adjust...
Should this be the intended behaviour? ``` np.genfromtxt(bval) >>> array([ 5., 5., 610., 1240., 615., 1225., 625., 1230., 620., 1230., 610., 1240., 615., 1225., 620., 1220., 620., 5., 1225., 615.,...
I've been doing more tractography lately and was getting really bad tract segmentation on a particular group of scans acquired on a Siemens Prisma. After talking to Yogeth Rathi's group...
Hi, I am running a nightly version of Slicer built on 2018-08-17 and Slicer dMRI built from commit the following [commit](https://github.com/SlicerDMRI/SlicerDMRI/commit/2ee3f16e6a72c802a2a09800762f8d18bf90f398). I noticed that I get very different tractography results...
Could an extra command line argument be added to ignore the bids validator?
Resolves #191 Also seen in https://github.com/nipreps/smriprep/pull/214 When running aslprep with the `--anat-derivatives` flag, the wrong tissue labels are being used.
After running aslprep v0.2.7 with the `--anat-derivatives` flag (using previously pre-processed anatomical outputs from fmriprep), we noticed that we were getting similar values in the `quality_control_cbf.csv` for `GMmeanCBF` and `WMmeanCBF`....
I've been having some trouble running the `wm_quality_control_tractography.py` script. I've been attempting to run the scipt in a folder with multiple vtk files using the command: `wm_quality_control_tractography.py ./ ./QC/InputTractography/` The...