Michael Joseph

Based on the gifs eddy provides for [outlier replacement](https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/eddy/UsersGuide#eddy_with_outlier_replacement) and [within-volume motion correction](https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/eddy/UsersGuide#Correcting_slice-to-volume_movement_with_eddy), it looks like this would benefit any dataset. Although, you might have more extreme artefacts in high-motion...

Thank you for your reply Fan! Yes, all parameters have been set the same and using the same mask.

Hi Fan, I'm not sure if this is a dataset-specific issue. Below I've posted a screenshot of the same data but with line visualization mode. The interactive mode is on...

Awesome! Datalad also now has an [OSF extension](http://docs.datalad.org/projects/osf/en/latest/). Should we consider using this to stay consistent with the IntroMRI lesson and also continue pushing the concepts of dataset version control?...

Using `datalad` would also tie into `NeuroLibre` hosting. If we create a new repository on OSF, we would need to use the datalad OSF extension in order to push the...

Thanks for the suggestions @caugolm! We tried v0.2.8 and still see the same issue. Running aslprep **without** the `--anat-derivatives` flag (using FSL FAST) did seem to give us more reasonable...

> The `PYTHONPATH` issue is still not resolved. Adding it to `PYTHONPATH` allows for the import from the terminal within binder, but Jupyter does not recognize this within binder. Will...

> Either way, I would add a note to warn users about this memory management. I have not been able to find any relevant mention in the official doc, though:...

> > > > https://mybinder.readthedocs.io/en/latest/about/about.html#how-much-memory-am-i-given-when-using-binder > > Thanks @josephmje. So that's about binder. Was wondering about the Jupyter side too. I think the 2 GB limit is only on Binder's...

Thank you @arokem . I'll keep thinking about how to QC these and look at the dipy implementations for denoising and resampling.