Jonathan Rondeau-Leclaire

Splitting table with strain-level resolution (R code)

2

Hi @taylorreiter, I recently tried out your tutorial to run Sourmash Gather and import the output into a phyloseq object (discovered during STAMPS!). It worked out super well on the...

hi, there's a simple misprint in the header to [this section](https://github.com/biocore/gemelli#repeated-measures-study-ie-one-sample-per-subject-with-ctf) which I think should say multiple samples per subject cheers

The link at the end of [this section](https://github.com/biobakery/phylophlan/wiki#phylophlan-metagenomic-sgbs) seems broken the one on the main page works though

plot options

1

Hi! I've been playing around with corncob and I can't figure out how to properly format the plots. The plot() function somehow stitches together all taxonomic levels from the taxonomy....

Hi, If I were to provide a genus ID, would using --exclude --include-children --include-parent manage to remove: - the read from the phyla - all its children, - and (where...

GTDB release 9 - RS220 - databases

3

Hi, I was wondering if the gtdb reps 220 had been sketched (or is about to be)? Otherwise, would it be possible to provide/point to the command you use to...