Jonathan Rondeau-Leclaire

We have the same problem with metaSpades here, where some (but not all) our larger samples output the following error : ``` 1:54:42.987 2599M / 2819M INFO K-mer Counting (kmer_data.cpp...

I realised we can aggregate to species level using sourmash tax metagenome , so my first remark might not be as relevant as I thought.

Hi! I am also curious to know if anything changed since this thread was started. Cheers

Same here, Mac OS 10.14.6 audio ads are getting through

This is currently happening to me as well, all of a sudden (no updates since it last worked) tree % as.data.frame p

Running into something similar here; I have 131 samples, altogether ~950 species identified across these using SM gather, 188 of which have been suppressed from ncbi for various reasons. That's...

Hi @ctb ! I'd like to slide into this discussion, hopefully not too far away from the subject. @yuzie0314 is comparing (i assume) Metaphlan results with Sourmash, which I've also...

I agree, the important thing is to acknowledge this. Thanks for the quick reply!

Hi @jenniferlu717 I am testing a two-step kraken search (nt search, then translated on unclassified reads from nt search), then combining these reports. Do you see a problem with running...

I am trying to extract the adjusted p values associated with each model's taxa. The Pr(>|t|) value in the models doesn't seem to match either the $p or $p_fdr associated...