jonathanperrie

Would it be acceptable to call getCounts multiple times and then stitch the results together into a larger summarized experiment?

For those curious, that is what I ended up doing: ``` frag_counts1

I think it's best to just use one set as the motifs heavily overlap with each other. You could examine this by using one set (as you have done) and...

Maybe something in here might be of use: https://github.com/GreenleafLab/motifmatchr/blob/d0dc70e5b25d4d80b5bd96de8820a82de174baa5/R/match_motifs.R