Jonathan Göke

icon indicating a website link www.jglab.org

icon company Genome Institute of Singapore, @GoekeLab icon location Singapore icon location Computational Biology Group Leader, Genome Institute of Singapore, @GoekeLab

Results 22 comments of Jonathan Göke

Prolems about long mRNA reads mapping

answered in #69

Download datasets

Hi @lwlive can you post this to the discussion (as a separate entry from your other question)? We can reply there then. Thanks!

Add BLAZE

Hi @youyupei thanks for the addition! Can you resolve the conflict due to the addition of another chapter in the file? We will then merge the pull request. Thanks!

add metagen and assembly

Hi @colindaven, thanks for the contribution, this is great. There were some changes in the meantime that lead to a merge conflict., can you resolve this? I will then approve...

estimate relative read count/ subset read count for final annotation object

implemented in #260

implement post filter function based on average across all samples

implemented in #260

replace assignGeneIDexonMatch with assignGeneIDs

implemented in #260

enable fusion transcript discovery with bambu

implemented in #260

difference of eventalign files

Hi @rezarahman12 I think the size is as expected, the eventalign.txt is a large file. The data from Zenodo is a index file, which is a different and much smaller...

Example of how to generate junction file from fastq

Hi @lukauskas it's a good idea, thanks for the suggestion. proActiv has no specific requirements (and it will actually work with any aligner, not just STAR and TopHat2 if you...