Jonathan Crabtree

Currently convert_gff3_to_gbk.py will only create GenBank entries for input sequences that have at least one feature localized to them in the GFF. However, one might want to create GenBank entries...

Allow Circleator to draw Circos-style chord diagrams.

In the case where this happens: > WARN - option 'color' at line 12 is not supported by glyphs of type 'rectangle' and has been ignored > WARN - option...

Look into possibility of automatically calculating the pad amounts required from the figure labels.

Add an option to render Circleator figures as linear plots, without any change in configuration file or input data. Some of the necessary changes: - A new command-line option (--uncircle...

Add walkthroughs/tutorials for basic use-cases.

3

Add walkthroughs/tutorials for basic use-cases to the documentation. The resulting images can also be added to the gallery.

Curved rectangle outline/path fails to account for stroke-width

1

There's a slight bug that only becomes apparent at large stroke-width values, namely that the endpoint of the path drawn around each curved rectangle (the circleator `rectangle` glyph) needs to...

See if there's a way to get GitHub pages to treat .cfg files as plain text.

2

See if there's a way to get GitHub pages to treat .cfg files as plain text.

The default packer is running when `label-type=spoke`, which means that the font size may vary depending on the number of labels and their relative positions. Ideally the packer should take...

Fix Markdown code blocks in documentation.

1

The Markdown code blocks in the documentation need fixing, specifically something needs to be done about the fact that many of the code lines run off the right hand side...