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Add walkthroughs/tutorials for basic use-cases.

Open jonathancrabtree opened this issue 11 years ago • 3 comments

Add walkthroughs/tutorials for basic use-cases to the documentation. The resulting images can also be added to the gallery.

jonathancrabtree avatar Oct 01 '13 15:10 jonathancrabtree

From the manuscript:

  1. visualizing the gene annotation and DNA sequence data from a GenBank flat file e.g., for a finished or draft bacterial genome
  2. investigating patterns of gene conservation in two or more closely-related strains or serovars
  3. showing SNPS and indels in several microbial strains relative to a reference genome and reference gene set
  4. viewing coverage plots of RNA-Seq data from multiple transcriptomic samples aligned to one or more prokaryotic or eukaryotic genomes

jonathancrabtree avatar Oct 13 '13 03:10 jonathancrabtree

A comprehensive GenBank flat file visualization tutorial has been added:

http://jonathancrabtree.github.io/Circleator/tutorials/gb_annotation.html

jonathancrabtree avatar Nov 24 '14 17:11 jonathancrabtree

Four done, only one (graphs and heat maps) left.

jonathancrabtree avatar Oct 12 '15 20:10 jonathancrabtree