Jonas Andreas Sibbesen

Hi, currently the only way to create a pantranscriptome using the vg toolkit is from a transcript annotation in gtf/gff format.

Hi, based on the assert it looks like one of the exons in the `example.gff` transcript annotation has an end coordinate that is larger than the length of the corresponding...

Hi Agnieszka, Transcript paths are not added to the graph by default in `vg rna` (only splice-junctions are). You can add the paths to the graph using the option `-r`....

It seems to happen when projecting transcripts between paths in the graph, but I am not sure why it fails on these assertions. I do not think it is a...

Are you able to share them using Dropbox, Google Drive or something similar? My email is [email protected]

Perfect, thank you!

Hi, I am not sure why this assertion is failing. Would it be possible for you to share the data? Best, Jonas

[email protected] Thanks!

Hi Du, We do not have any experience running the vg call pipeline on RNA-seq data as far as I know. I am therefore not sure how well it would...

Hi Jordi, Thank you for writing. This error occurs when the input vcf is either not sorted or contains multiple variants on the same position. The vcf input for BayesTyper...