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Published 20 hours ago • verified publisher icon vgteam

pantranscriptome constructed

Open Sourirewang opened this issue 2 years ago • 1 comments

Hi, Vg team, I’m @Sourirewang and I’m interested in vg tools.I just have two full-length transcriptome and many transcriptome sequencing data. And I wonder whether a pantranscriptome can be constructed without a reference genome? Thanks a lot if you can reply.

Sourirewang avatar Jun 05 '22 12:06 Sourirewang

Hi, currently the only way to create a pantranscriptome using the vg toolkit is from a transcript annotation in gtf/gff format.

jonassibbesen avatar Jun 13 '22 09:06 jonassibbesen