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                                            jon4thin

GRCh38 version of pext?

Is there / will there be a GRCh38 version of pext for gnomAD v2.1.1 liftover?

WARNING: Plugin 'LoF' went wrong: Can't locate object method "prepare" via package "false" (perhaps you forgot to load "false"?)

> Hello I had the same problem as you, to solve it you have to download the sqlite "phylocsf_gerp.sql", you can downloaded from the link that readme provides in this...

Can't exec "samtools"

Jinxin, was there actually any LoFTEE annotations tho? It probably does not, if the package could not run (it needs samtools). The error says that VEP is looking for samtools...