rGREAT

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hello jokergoo, When I used local GREAT analysis with the function great(), following the description of great() as below figure show, I got an error. ``` res_posi

CocoConstant

Came across an edge case with submitGreatJob Running: ``` target_gr

dlukacso

max gene set size

1

Dear rGREAT developer, I am checking the local GREAT analysis function `great`, and found there is a `min_gene_set_size` option, I was wondering if we provide a `max_gene_set_size` to restrict the...

wbvguo

Error in submitGreatJob(gr = gr, bg = bg, species = species)

3

Hello! I am running this code to analyse single cell ATAC data up_distalPeaks_enrich

emanuelavilla

[Request] Support for genomes beyond GenomeInfoDb's seqlevelsStyle

3

Thank you for this helpful package. I noticed that the package has a fairly strong integration with `GenomeInfoDb`. (From the perspective of Bioconductor data structure integration that's great.) But, the...

asgeissler

Hi, I am trying to run the example code of submitGreatJob function but it is failing with "Error: Not found". Can you please look into this? > session_info() ─ Session...

ashishjain1988

Hello Thank you for developing/maintaining the package and for the detailed documentation. I have a question regarding the appropriate statistics to use when running rGREAT with explicitly defined background. According...

OrangeyO2

adjustment of p-value sensitivity in enrichment table results?

10

Thanks for all your work on this package! I have a question regarding the p-values that are reported after using `rGREAT::getEnrichmentTable` . When running several datasets through the local analysis...

andvon

Explanation of GO results columns

1

Hello, I am using online GREAT, and was wondering if I could get an explanation of what the following column names in the GO output mean: - FgRegionsHit - BgRegionsHit...

acv21

If `gr` has other meta-column, genes will use that column

jokergoo