rGREAT icon indicating copy to clipboard operation
rGREAT copied to clipboard

Error in submitGreatJob(gr = gr, bg = bg, species = species)

Open emanuelavilla opened this issue 1 year ago • 3 comments

Hello!

I am running this code to analyse single cell ATAC data up_distalPeaks_enrich <- Great.enrich(gr = up.distal.bed, bg = CMP.bg, title = paste0(x, "_up_distalPeaks"), Type = "GO Biological Process", species = 'mm10')

but it returned this error Screenshot 2024-01-11 at 11 16 18

However, when I inspect the line, the format is correct Screenshot 2024-01-11 at 11 17 15 Furthermore, I have already used the same code for another dataset and it worked.

Any suggestion?

emanuelavilla avatar Jan 11 '24 10:01 emanuelavilla

Hi, dear @emanuelavilla,

Sorry to bother, Have you solve this problem successfully? I encoutered the same error like this.

Best, Kong

FFeiKong avatar Mar 15 '24 11:03 FFeiKong

I knew where the problem is, I typedoptions(scipen = 999)in R to prohibit The use of scientific numeration.

FFeiKong avatar Mar 15 '24 12:03 FFeiKong

Sorry for the bug. Now I have fixed it and enforced all numbers to be integers.

jokergoo avatar Mar 26 '24 09:03 jokergoo