circlize

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About the line type in function circos.segments

1

Hi Dr. Gu, Thank you so much for providing us with this brilliant package. And now I have two questions, one for the line types in the function `circos.segments`, and...

nzx9581

Wrap text of sectors names in order not to be cut off

4

Hi, The code used to end up with the attached plot  is the following: ``` svg(filename = "../results/chordDiagram_test.svg", width = 16, height = 18) chordDiagram(adjacencyData, annotationTrack = "grid", preAllocateTracks...

elpavlos

您好，用了您的circlize和complexheatmap，非常棒! 报告一个bug，此页面[Chapter 6 The circos.heatmap() function | Circular Visualization in R (jokergoo.github.io)](https://jokergoo.github.io/circlize_book/book/circos-heatmap.html#a-complex-example-of-circular-heatmaps) 根据您模拟的数据  R85应该是C10最大，C3最小（图中红色框线所示，C2,C3,C4都是蓝色，数值也对的上，从外到里应该是C1-C10）  但是在您标注名字的图中，R85所示的C7,C8,C9是蓝色块，而C1是最大的。这好像是标注反了，麻烦check下，谢谢！ 

jokergoo

Is there a way to label `circos.link` automatically?

5

Is there a way to label `circos.link` automatically? What I am looking for is a way where I do not need to call `circos.text` in addition.

ms-gx

data is two columns and more than 10 rows

1

- When the data is two columns and more than 10 rows, it will not be able to plot correctly and no error will be reported. After modifying part of...

slx92

Unable to plot bargraphs with unequal number of samples per sector

1

Hey, I have been trying to use the following code to plot the columns from the data attached. I tried to create sectors the size of samples with the value...

anubhabkhan

chordDiagram not plotting arrow when direction.type includes "diffHeight" and input data frame has 2 rows

3

After much testing with `chordDiagram` (circlize_0.4.13), it becomes pretty obvious that it does not work as expected when the input data frame contains only 2 rows, and the `direction.type` parameter...

dcarbajo

How to rotate and do not close my circos plot,like this

2


zhipengliux

to-do list 2022-06-10

1

## chord diagram - [x] chordDiagram: Color gradients between groups #313 - [ ] In circos.heatmap, support border.color as a vector #308 - [ ] calc_gap() when it is not...

jokergoo

Circular genome labels wrap on larger genomes

2

This produces the expected output: ```R pdf("test.pdf", width = 11, # The width of the plot in inches height = 8.5 # The height of the plot in inches )...

Benjamin-Lee