Unable to plot bargraphs with unequal number of samples per sector

[anubhabkhan]

Hey,

I have been trying to use the following code to plot the columns from the data attached. I tried to create sectors the size of samples with the value in ANC column. However, it keeps giving the error: Note: 69 points are out of plotting region in sector 'NyNy', track '1'. We are not able to find help to solve this. Could you please help:

The code:

ROS <- read.csv("ROS.csv")

circos.initialize(factors=ROH$Ancestry_geography, x=ROH$INDV)
 circos.trackPlotRegion( factors=ROH$Ancestry_geography, y=ROH$X100Kb,  
                         panel.fun = function(x, y){
                         circos.axis()
                         })
 set_track_gap(mm_h(2))
                           value=ROH$X100Kb
                           circos.barplot(value,0:22- 0.01)

ROS.csv

[jokergoo]

Is this what you want?

tb = table(ROS$Ancestry)

circos.par(cell.padding = c(0, 1, 0.02, 1))
circos.initialize(sectors = names(tb), xlim = cbind(0, tb))

circos.track(ylim = c(0, max(ROS$X100Kb)), panel.fun = function(x, y) {
	l = ROS$Ancestry == CELL_META$sector.index
	x = ROS[l, "INDV"]
	y = ROS[l, "X100Kb"]
	circos.barplot(y, seq_along(x) - 0.5)
	circos.text(seq_along(x) - 0.5, -uh(2, "mm"), x, facing = "clockwise", niceFacing = TRUE,
		adj = c(1, 0.5))

	circos.text(CELL_META$xcenter, CELL_META$cell.ylim[2] + uh(5, "mm"), CELL_META$sector.index)
})

circos.clear()