to-do list 2022-06-10

[jokergoo]

chord diagram

• [x] chordDiagram: Color gradients between groups #313
• [ ] In circos.heatmap, support border.color as a vector #308
• [ ] calc_gap() when it is not a two-group chord diagram #319
• [ ] Visualize multiple group intersections (similar to a multi group Venn diagram) #296

Heatmap

• [ ] support render circular heatmap as a raster image #279
• [ ] Time consuming #278
• [ ] in circular.heatmap(), support column clustering, show column names. Note columns are corresponded from most outside to inside.

pos transform

• [ ] posTrans should go to basic low-level graphics
• [ ] overlap circos.labels() to other tracks
• [x] optimize circos.labels() #357
• [ ] shift text for neighbour sectors, e.g. in chord diagram, where there is a cluster of small sectors.

Others

• [x] Sector has radical offset #290
• [ ] A real circular coordinate #295
• [ ] add circos.labels #274, #255
• [ ] add circos.initializeCircularGenome in the book #273
• [ ] Comparison of 3 bacterial genomes #276
• [ ] add a circos.phylo()
• [x] add a circos.horizon()
• [ ] add a circos.stackedText(): https://twitter.com/jokergoo_gu/status/1596081092154753024
• [ ] add borders around text https://github.com/jokergoo/circlize/discussions/341
• [x] moving the whole sector (including all tracks) away from the circle
• [ ] Hierarchical edge bundling #354
• [ ] combine two half circos plot (how to add links between them)?
• [ ] units?