John Lees
John Lees
Hi Carmen, I've tried to reproduce this bug, but I am unable to. I've also run through with valgrind (which lets you check for segfaults) and that doesn't turn anything...
Ok, glad that we seem to have nailed it down. Unfortunately I don't write or support graph tool so the help I can provide is more limited, but some suggestions...
I've seen numeric errors before (giving wildly inaccurate p-values) when I had an older version of numpy / inconsistent conda installation. I also recall a QQ plot of roughly that...
@flashton2003 great, thanks for the info. I'm away for the next week, but will try and replicate this as soon as I get a chance Must be an issue with...
The elastic net tests (31-34) might have a problem, and a couple of others have warnings, but the LMM tests all passed (though as you point out the unit tests...
- The fixed effect models look ok to me – what is the problem you are having? - The mixed effect model looks like it's probably a label mismatch causing...
Or https://github.com/biocore-ntnu/pyranges
Or https://github.com/lh3/cgranges
We do plan on adding this in a future release - I wrote some prototype code to interface to such a model, but haven't had a chance to fully integrate...
Realistically no, sorry, I don't see this being added to pyseer any time soon. I expect that pyseer will remain fairly frozen with its current set of features. You could...