John Lees
John Lees
How are you compiling to get this error? We had to introduce the vendor approach to work with pypi and some other packages, but I could add a compile arg...
@richfitz do you have any suggestions/opinions on this issue? I believe this was actually added for cases where conda isn't an option > Dependencies and necessary header should all be...
I'm happy to add an option which ignores the vendor directory and uses the system boost, but for one of our install set ups the vendor directory seems to be...
Seg faults are difficult to diagnose, but this looks like it's coming from sketchlib rather than mandrake based on the output messages. How many samples do you have, and is...
> Hello, Does the continuous phenotype need to be normally distributed when using LMM model? Because I read somewhere that the requirements for LMM model are phenotypes and residuals need...
Down to @eseiler if he wants to rename the files and get this merged. FWIW my solution has been to vendor this package outside of conda, which I've been happy...
Can you please provide the versions of PopPUNK, pp_sketchlib and mandrake
I think this is likely due to an API breaking change in sketchlib, can you try with version 2.0.0 rather than 2.0.1. This will be fixed in poppunk 2.6.0, which...
I'm not sure why the microreact pickle file isn't available, it's likely an install problem that would be fixed in a clean environment. But as you note this is just...
I'm going to close this issue, but please feel free to reopen if you want to look at the memory issue again with what I suggested above