John Lees

As far as I can tell the programs run correctly, and the segfault is only caused on exit. This only seems to happen with the statically compiled version. I realise...

We've had a go at this (with the help of @Slugger70), but need a newer compiler for it to work: https://github.com/bioconda/bioconda-recipes/pull/5005 This is being added to bioconda at the moment,...

Please can you post the contents (or at least the first few lines) of your `qfile.txt`

Looks like you have spaces between name and file? They should be tabs: > Must contain sample name and file, tab separated

Might be the line endings then – are they Windows carriage returns? Other things to try: - Confirm you can run the example dataset (see in https://github.com/bacpop/PopPUNK/tree/master/test) - Try just...

How have you installed poppunk and sketchlib here? Sketchlib's most recent release is v2.1.3, I think the install might have a problem here as you're getting a segfault. Can you...

> i followed the installation instruction on poppunk github Sorry I need some more specifics here, was this via conda/mamba/source? We have a few different installation methods: https://poppunk.bacpop.org/installation.html I would...

Can you try with the latest version (v2.6.5) and confirm whether you still get this issue there? Looking at the release history I see we've made multiple changes to the...

Thanks for the report and re-running. Looking at the code, where we (try) to do this is in these two places: - https://github.com/bacpop/PopPUNK/blob/master/PopPUNK/visualise.py#L352-L373 - https://github.com/bacpop/PopPUNK/blob/master/PopPUNK/visualise.py#L604-L610 I can't see an obvious...

Sorry I'm not clear from the above what is the issue you are having?