JoeHou
JoeHou
"Range of the sector (IGHJ4 ) cannot be 0." I check the file, but I don't find any missing of IGHJ4
Here’re the data and VJ usage data table. I can see the IGHJ4, but not “IGHJ4 “. All the other sample are good, only this one gets error. From: Mikhail...
And what about the meaning of white/opened circles?
Actually, this is a technical question due to my unfamiliarity with the parameters of some functions. Can I say, use LIANA result to replace the lr_network in the entire vignette?...
> 2\. data(immdata) I ran into the same error with my data. bulit-in data works fine. My data set is not huge, run as a pilot test with 1000+ seqs....
> I try your method. But, the cell type is still converted into an integer after exporting into Python.
I should say this, when running highlight_module with pathway, the highlight_module download module files are not in the designated directory.
The other issue I encounter is, cluster_colors conflict with circ_data$color variable. When I assign color in the circ_data, and leave col.use= NULL. the UMAP will use the color I assign...
Thanks. Fix it. But can I customize the color? I've tried to either give color as fine_map_cluster_color = c("#85660D", "#C4451C","#FFB79F", "#B00068","#F6222E","#FF9DA7") or fine_map_cluster_color_list = c("CD4-CD8-(1)" = "#85660D", "CD4-CD8-(2)" = "#C4451C",...
> Can you check `levels(your_seu_obj)` and see what it returns? You should be able to see your cluster ID. If not, pls set it to your cluster ID with Seurat...