Joanna Rifkin

panEDTA path specification

18

Hi Shujun, Thanks as always for EDTA! I think this is a silly question - I'm having trouble figuring out how to specify the paths for the genomes I'm putting...

Structural TEs appear not to be renamed by panEDTA

9

Hi Shujun, Another question. I'm running panEDTA on a bunch of species. It says it's successfully reannotating the structurally annotated TEs, e.g.: > Sat Oct 14 15:10:05 EDT 2023 EDTA...

Singularity and panEDTA

9

Hi there, Thanks for developing EDTA - it's great! And I'm excited to run panEDTA - I've already successfully run EDTA on 10 related species. Apologies if this is a...

panEDTA timing out on large genomes

4

Hi Shujun, I'm trying to wrap up some work on the Hesperis matronalis genome and am having a problem with panEDTA - it keeps timing out. I've cranked up the...