panEDTA timing out on large genomes

[joannarifkin]

Hi Shujun,

I'm trying to wrap up some work on the Hesperis matronalis genome and am having a problem with panEDTA - it keeps timing out. I've cranked up the RAM to a terabyte and it still just runs out the 2 week job - this is the latest set of error logs.

I just started a new job to run only the H. matronalis genome so I can incorporate it into panEDTA later - all the other genomes so far have annotated fine, it just gets stuck on this big one. But is there something I'm missing here?

Thank you!

Joanna

panEDTA-7128863-4294967294.log panEDTA_error-7128863-4294967294.log