Joergen Kornfeld

There are some situations in which the external IPs cannot be used for SSH (eg due to firewall rules), making it desirable to have this as a configuration option. Reference...

Create continuous skeleton quality estimate widget

1

Can be implemented as plugin or native code. Problem: Annotators need feedback during tracing, to enforce proper and frequent node placement. The widget should display: 1) Mean inter node distance...

Multiple image channels with flexible overlay functionality

1

This would be extremely useful for our machine learning pipeline. Also, it would generally dramatically widen the possibilties with KNOSSOS when it comes to other applications (e.g. light microscopy with...

Each node needs a render flag

7

Each node should have a simple boolean render attribute that is respected by the renderer. This would open up very powerful visualizations possibilities. E.g. a Python plugin that sets this...

Double snappy overlay cubes in internal RAM snappy cache

1

This saves about 5-10x RAM and comes at a moderate CPU cost for compression / decompression.

These changes should probably be incorporated into a PythonQT fork for knossos first, with a possible pull request later. todo: - lock the Python GIL on entering Python code -...

One possibility would be to switch location of the skeleton VP and the new VP.

Tif stack exporter (raw data and overlay data)

4

- Export current raw super cube to tif stack - Export current overlay super cube to tif stack: Allow the export of only the currently selected object (anything else as...

Allow to drag, resize and position scale bar

2

This would be a very useful feature for simple measurements in the skeleton and data viewports. A "reset scale bar" button would then be required of course. I imagine to...

Dataset informations are taken from local dataset config file, not remote dataset config

2

The local file should only provide the path and authentication information, the rest should be ignored.