Jie Huang
Dear Jonathan: Thank you very much! i wish there is a python3 based MTAG someday soon. I always get easily confused with python2/python3, pip2/pip3, conda2/conda3... So, can you please kindly...
Dear Peter: I mean the latter, pheweb to use GWAS-VCF as input. As you know, these GWAS files with millions of rows are huge. It is very confusing and headache...
thank you veyr much! best regards, Jie
Dear Peter: Thank you very much! 1. I have a PYTHON savvy graduate student, who can help to update your **add_rsids.py** script so that it allows: **(1)** swapped ref/alt allele;...
Dear Peter: Another quick follow-up: 1. Most of my GWAS files already have "rsid" field (usually "SNP"). But it seems that pheweb will ignore my SNP field and run **add_rsids**...
Dear Peter: Thanks for providing the new version. I previousloy did NOT use "git clone". Instead, I simply run "**pip3 install pheweb**" and then the software magically worked. I even...
Dear Hyun: I now used "alias" to make python3 as the default. However, the error message still persists, shown as below.  Can you please let me know what is...
Dear Peter: Below is the log, based on your instruction  Best regards, Jie
Dear Peter: Yes, sure. Let's ignore the above error message for now. I ask my programmer to work on the **add_rsids.py** python script so that it does not require the...
still got the same error. I think the segmentation fault error came from reading the input file, RVTESTS has not gone to --meta or --single part yet. I still don't...