jianhuang

How can I use 1000G LD reference to perform MTAG based on GWAS from non-EUR population

1

Hi, I wonder if MTAG use the LD reference file in **ld_ref_panel** folder, even if I do not specify the _--w-ld-chr_ command. I would like to apply MTAG to GWAS...

After merging with reference panel LD, 0 SNPs remain

8

I got "After merging with reference panel LD, 0 SNPs remain." for my MTAG analysis. I found [a previous issue](https://github.com/omeed-maghzian/mtag/issues/8) discussing similar warning. But my data do not include ChrX....

std_betas and perfect_gencov

2

I am running MTAG with multiple measures of the same traits. GWAS are from the same samples. I used beta and se as input. It seems that I cannot call...

Harmonisation and strand flip by PRSice

2

Hi I wonder how PRSice deals with inconsistent strand and allele coding between the base GWAS and the target sample. I found a statement from the webpage that PRSsice performs...