Jianshu_Zhao

Hello All, I have the same problems with compiling (alway some errors). For the submodule problems, do not link to another github page but just copy them to this repo...

Thank you！ Best， Jianshu

hi Both, maybe just some bash script to extract a representative for each cluster from the genome list or folder. The problem is, which one to choose as representative. I...

Hello @iimog, If we rely on iqtree2 (we can use partitioning with iqtree2), then it should be fine after some simple testing. But again iqtree2 is not very fast for...

Hello @iimog, Let me know how you create the .jar file if possible, I am new to Java (e.g., not idea how to create a jar file). I will try...

Hello @iimog, Since you also mentioned this, trimAl is more updated and can be used for any modern CPUs (even M1/2/3 series by Apple). Check it here: https://github.com/inab/trimal I think...

Hi Jim, I was using the library, not here the most recent GitHub binary. Maybe we should do something similar to the buffer-redux one, update/upload a new one with a...

I have the same error here. Is this resolved? Best, Jianshu

hi @leonmhartman, Thanks! It actually works. I am downloading it right now. I will be using it to remove host contigs from the American gut project. Perhaps I will have...

Hi @leonmhartman, Thank you so much for it! Let me know when you get the response from authors. I will use the old version first (v207 pr something). Thanks! Jianshu