SpaGCN
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jianhuupenn
SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network
Hello, Thank you so much for this useful tool for domain detection. I'm trying to use it on my own data, but I only have pixel coordinates. I followed your...
Hello I am having batch effect issue for running multiple sample clustering in spaGCN as indicated in previous post https://github.com/jianhuupenn/SpaGCN/issues/37 Would you please help me if you can explain steps...
Hello I followed all the tutorial for the spaGCN such as https://github.com/jianhuupenn/SpaGCN/blob/master/tutorial/tutorial_ez_mode.ipynb and https://github.com/jianhuupenn/SpaGCN/blob/master/tutorial/tutorial.ipynb . For my data, I identified clusters from individual samples. When I compared result with ground...
Hello, We are doing a similar study to SpaGCN and trying to compare it in our experimental results. But for all our brains and efforts, we couldn't find the SLIDE-seqV2...
Hi, Very cool tool ! I'm working with SpaGCN with my own data and encountering the same error as #33 . I looked back to my data and found adata.shape[0]...
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SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network