SpaGCN

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To run on GPU, two parameters are added: 1. `dtype`: default is `float32`, which is the same as the original code `FloatTensor`; however, the `dtype` can be set to `bfloat16`...

AyanoClarke

Variable names are not unique.

1

In the first code block in 3.read in data, there is the following error: Variable names are not unique. To make them unique, call `.var_names_make_unique`. Variable names are not unique....

Listen-lei

Hello, First, thanks for this great tool! I am trying to apply it to a somewhat large single cell resolution vizgen dataset of human lung cancer (Vizgen_Human_LungCancer_Patient1) from the MERSCOPE...

bmill3r

aleksa1902

add 'use_raw = False' for sc.tl.rank_genes_groups; change the p value index

zEpoch

problem reproducing turtorial

2

Hi, I was running the turtorial notebooks on my computer. Everthing seemed alright, the calculation of l and res returned same value as the turtoral. But there was a warning...

watergua

Dear Dr. Hu, I followed the tutorial.ipynb to identify SVGs in my dataset. However, I noticed that I am getting only 2 SVG solutions instead of the expected 5 as...

aleksa1902

I have a brief question regarding the computation of q_{ij} in lines: https://github.com/jianhuupenn/SpaGCN/blob/a67402d954572b4f088475c79f3492ec1a6048e4/SpaGCN_package/SpaGCN/models.py#L25 In the paper the formula is:  whereas the code says rather (ignoring alpha)  so is...

schae211

I'm trying to process a sample with 90 000 observations and it gets killed (deficit of memory) during the execution of _l_search_ function. The machine I'm using has 36 CPUs...

vladimirkovacevic

Update the virtual env python version. Following the tutorial, the terminal outputs the following error ``` bash RuntimeError: Python version >= 3.8 required. ```

messcode