Jeremy Goecks

Galaxy-Scikit Learn paper

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@bgruening @qiagu To publish I suggest that we perform two analyses: 1. Reproduce the work in [this paper](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5890912/). This is a large analysis that will exercise much of the Sk-Learn...

TuRF doesn't work with odd number of features

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When the number of features is odd, TuRF often leaves out one feature (causing a value error at this line https://github.com/EpistasisLab/scikit-rebate/blob/master/skrebate/turf.py#L166) because segmenting of features into selected and non_selected is...

The database is here: https://p53.fr/ [UMD_variants_US-annotated.xlsx](https://github.com/ohsu-comp-bio/g2p-aggregator/files/1507405/UMD_variants_US-annotated.xlsx)

Capture usage and user activities

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For understanding use of the system and eventually for learning from usage, we should instrument the user interface as much as possible. This includes: - recording search terms - recording...

- [x] stderr regex is less than ideal—a missing index gives a "fail" message but the job succeeds - [ ] the output dataset build is not set when there...

BWA's output bam generates some warning which in turn cause sam-merge to fail: ## Ignoring SAM validation error: ERROR: Record 12684017, Read name D00539:104:H5T7GBCXX:2:2216:1236:23192, MAPQ should be 0 for unmapped...