Jeremy Goecks

Agree this seems like the right approach for working with pickled files that we can't otherwise trust @bgruening, and it's also mentioned in the Python docs as well so likely...

Ah, good to know. How far along is this work?

@qiagu Here's my current list: - [x] introduce the new dataset input system (including the column selector, header options and so on) to the old tools. - [x] add pre-processing...

Thanks @qiagu IMO none of these are needed for submitting a manuscript. We should all try using the tools a bit and see if there are any huge issues that...

I started a branch with fixes here: https://github.com/jgoecks/galaxy/tree/UserBasedObjectStore2 Specifically, there are fixes for anonymous access. I can't seem to find your fork to initiate a pull request however—perhaps because your...

@VJalili I still cannot find your fork to make a PR against. I'll try to look into this more soon.

In!

@mayfielg @bwalsh I do not think we should defer this. Many evidence records in several databases have negative directions, and postive/negative direction has implications for analysis of TCGA and GENIE.