Jonah Gabry

icon indicating a website link jgabry.github.io

icon company Columbia University @stan-dev icon location Denver & NYC icon location Statistician and Stan developer at Columbia University

Results 777 comments of Jonah Gabry

make save_output_files create files with all comment lines at the start

Sorry I'm just seeing this issue now, not sure why I missed it before. Unfortunately this is the way CmdStan itself writes the CSV files during sampling, not something that...

Remove stanc flags munging for `cpp_options$stan_opencl`

After chatting with @WardBrian, we're going to hold off on changing this in cmdstanr and probably fix it in the compiler via https://github.com/stan-dev/stanc3/pull/1541 or maybe in the cmdstan makefiles.

Remove stanc flags munging for `cpp_options$stan_opencl`

Great, thanks!

cmdstanr::sample() saves incorrect path to csv files, Windows

Thanks for reporting. Tagging @andrjohns, who knows a lot more about WSL than I do.

Forward vs. back slashes killing path assertions during $sample calls when using WSL w/ Ubuntu

Thanks for reporting this and investigating it! I'm not a Windows or WSL user at all, so I'm going to need some help if we're going to fix this. @andrjohns...

Forward vs. back slashes killing path assertions during $sample calls when using WSL w/ Ubuntu

It seems like this > 1. Looks like it doesn't appreciate the `\\` that R is appending to the path. If I add `path

Cannot import cmdstanr in my package

Thanks for reporting this. I will try to look into this when I have a chance, but I'm a bit overloaded at the moment. For now, have you tried what...

Escaped regex characters in variable_dims()

Thanks @VisruthSK! @yizhang-yiz can you check if this works for you?

Escaped regex characters in variable_dims()

I do wonder if anything else will break downstream if we have parameter names with parenthesis in them. We don't have tests for all the post-processing functions with non-standard parameter...

Escaped regex characters in variable_dims()

After playing around a bit, this alone won't solve the issue in #1116. Unfortunately there are other issues caused by variable names with parentheses. I'm thinking it's best to just...