Jessie Jie Ren

Thanks for your support. Currently VirFinder does not support multi-threads. To make it happen, one possibility is to use the doParallel package in R https://cran.r-project.org/web/packages/doParallel/vignettes/gettingstartedParallel.pdf. The main change is to...

Thanks for your interest in using DeepVirFinder. DeepVirFinder trained a few models for predicting contigs of different lengths. As we stated in the paper, “we use the model trained by...

Hi drelo, Sorry for my late response. If you still need help, you may contact Nathan Ahlgren @nahlgren for help. Best, Jessie

Thanks for using DeepVirFinder. Do you see any log output? ________________________________________ From: rubenbucio ***@***.***> Sent: Tuesday, April 6, 2021 10:36 AM To: jessieren/DeepVirFinder Cc: Subscribed Subject: [jessieren/DeepVirFinder] Running time (#21)...

Hi there, Are you using CPU for computation? It will speed up a lot if you use GPU. Thanks! Jie ________________________________________ From: rubenbucio ***@***.***> Sent: Tuesday, April 6, 2021 3:11...

Thanks for reporting that. Could you copy your command here for the purpose of debugging?

Thanks for reporting the error. Can you try to create an virtual environment and install DVF there? > conda create --name dvf python=3.6 numpy theano=1.0.3 keras=2.2.4 scikit-learn Biopython h5py source...

I am glad to hear the feedback from you. Thank you very much for the contribution. I will incorporate the verbose option in the next version of the package. So...

Hi there, Sorry for my late response. It is possible that the error was due to the version of Keras changes overtime. Could you please reinstall the packages following the...

Hi denisbruno, Did you solve the problem? If not, could you please send me the command you use? Thanks! (sorry that I thought I replied your message through emails, but...